peak_analysis: Peak checking for the second coverage threshold and width.
In irilenia/baerhunter: Detection and Analysis of Expressed Intergenic Elements in Bacterial RNA-seq Data
View source: R/feature_file_editor.R
peak_analysis R Documentation
Peak checking for the second coverage threshold and width.
Description
This is a helper function that is used to examine if the peak had a continuous stretch of a given width that has coverage above the high cut-off value.
Usage
peak_analysis(View_line, high_cutoff, min_sRNA_length)
Arguments
View_line
A line from a RleViews object.
high_cutoff
An integer indicating the high coverage threshold value.
min_sRNA_length
An integer indicating the minimum sRNA length (peak width).
Value
Returns a RleViews line if it satisfies conditions.
irilenia/baerhunter documentation built on May 18, 2024, 11:56 p.m.
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View source: R/feature_file_editor.R
| peak_analysis | R Documentation |
Peak checking for the second coverage threshold and width.
Description
This is a helper function that is used to examine if the peak had a continuous stretch of a given width that has coverage above the high cut-off value.
Usage
peak_analysis(View_line, high_cutoff, min_sRNA_length)
Arguments
View_line |
A line from a RleViews object. |
high_cutoff |
An integer indicating the high coverage threshold value. |
min_sRNA_length |
An integer indicating the minimum sRNA length (peak width). |
Value
Returns a RleViews line if it satisfies conditions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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