sRNA_calc: sRNA prediction
In irilenia/baerhunter: Detection and Analysis of Expressed Intergenic Elements in Bacterial RNA-seq Data
View source: R/feature_file_editor.R
sRNA_calc R Documentation
sRNA prediction
Description
The function for prediction and annotation of sRNA.
Usage
sRNA_calc(major_strand_features, target_strand, union_peak_ranges)
Arguments
major_strand_features
A dataframe containing the major features for a particular strand.
target_strand
A character string indicating the strand. Supports two values; '+' and '-'.
union_peak_ranges
An IRanges object containing genomic coordinated for all peaks detected on the target strand.
Value
An IRanges object containing coordinates and names of the predicted sRNA.
irilenia/baerhunter documentation built on May 18, 2024, 11:56 p.m.
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View source: R/feature_file_editor.R
| sRNA_calc | R Documentation |
sRNA prediction
Description
The function for prediction and annotation of sRNA.
Usage
sRNA_calc(major_strand_features, target_strand, union_peak_ranges)
Arguments
major_strand_features |
A dataframe containing the major features for a particular strand. |
target_strand |
A character string indicating the strand. Supports two values; '+' and '-'. |
union_peak_ranges |
An IRanges object containing genomic coordinated for all peaks detected on the target strand. |
Value
An IRanges object containing coordinates and names of the predicted sRNA.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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