UTR_calc: UTR prediction

In irilenia/baerhunter: Detection and Analysis of Expressed Intergenic Elements in Bacterial RNA-seq Data

UTR prediction

Description

Function for prediction and annotation of UTRs.

Usage

UTR_calc(
  major_strand_features,
  target_strand,
  union_peak_ranges,
  min_UTR_length
)

Arguments

major_strand_features	A dataframe containing the major features for a particular strand.
target_strand	A character string indicating the strand. Supports two valies; '+' and '-'.
union_peak_ranges	An IRanges object containing genomic coordinated for all peaks detected on the target strand.
min_UTR_length	An integer indicating the minimum UTR length.

Value

An IRanges object containing coordinates and names of the predicted UTRs.

irilenia/baerhunter documentation built on May 18, 2024, 11:56 p.m.