tpm_flag_filtering: Filtering features by a target flag.

In irilenia/baerhunter: Detection and Analysis of Expressed Intergenic Elements in Bacterial RNA-seq Data

Filtering features by a target flag.

Description

A function to filter the marked features selected by the user by the flag of choice.

Usage

tpm_flag_filtering(
  flagged_annotation_file,
  target_features = c("putative_sRNA", "putative_UTR"),
  target_flag,
  output_file
)

Arguments

flagged_annotation_file	A flagged GFF3 annotation file.
target_features	A string indicating feature type to filter (optional).
target_flag	A string indicating a flag for filtering.
output_file	A string indicating the name of the output file.

Value

A GFF3 file where a target feature type is filtered by the expression flag of interest.

irilenia/baerhunter documentation built on May 18, 2024, 11:56 p.m.