make_saf: SAF converter
In irilenia/baerhunter: Detection and Analysis of Expressed Intergenic Elements in Bacterial RNA-seq Data
View source: R/count_features.R
make_saf R Documentation
SAF converter
Description
This function converts gff file into simplified annotation format with 5 columns, appropriate for use in featureCounts/tpm_norm_flagging.
Usage
make_saf(ann_file, exclude = F)
Arguments
ann_file
A GFF3 annotation file.
exclude
A boolean to indicate whether or not to include rRNA/tRNA features
Value
A dataframe in Simplified Annotation Format
irilenia/baerhunter documentation built on May 18, 2024, 11:56 p.m.
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View source: R/count_features.R
| make_saf | R Documentation |
SAF converter
Description
This function converts gff file into simplified annotation format with 5 columns, appropriate for use in featureCounts/tpm_norm_flagging.
Usage
make_saf(ann_file, exclude = F)
Arguments
ann_file |
A GFF3 annotation file. |
exclude |
A boolean to indicate whether or not to include rRNA/tRNA features |
Value
A dataframe in Simplified Annotation Format
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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