strand_feature_editor: Strand annotation

In irilenia/baerhunter: Detection and Analysis of Expressed Intergenic Elements in Bacterial RNA-seq Data

Strand annotation

Description

This function constructs the full annotation for the strand.

Usage

strand_feature_editor(
  target_strand,
  sRNA_IRanges,
  UTR_IRanges,
  major_strand_features
)

Arguments

target_strand	A character string indicating the strand. Supports two values; '+' and '-'.
sRNA_IRanges	An IRanges object containing coordinates and names of the predicted sRNAs.
UTR_IRanges	An IRanges object containing coordinates and names of the predicted UTRs.
major_strand_features	A dataframe containing the major features for a particular strand.

Value

A dataframe containing strand annotation populated with the prediction features, build in accordance with GFF3 file format.

irilenia/baerhunter documentation built on May 18, 2024, 11:56 p.m.