In isglobal-brge/dsOmicsClient: DataSHIELD client site Omics association functions.

In order to use the functions contained within this package the following R packages must be installed in the client side:

install.packages("DSIOpal")
install.packages('dsBaseClient', repos=c(getOption('repos'), 
                                         'http://cran.obiba.org'), dependencies=TRUE)
devtools::install_github("isglobal-brge/dsOmicsClient", dependencies = TRUE)

The package dependencies are then loaded as follows:

library(DSOpal)
library(dsBaseClient)
library(dsOmicsClient)

Notes:

For advanced users willing to use DSLite, the server side packages needs to be installed as well:

install.packages(c("resourcer", "DSLite"), dependencies = TRUE)
install.packages("dsBase", repos = c("https://cloud.r-project.org", 
                                     "https://cran.obiba.org"), dependencies = TRUE)

We refer to this chapter of our bookdown to a more detail description about how to work with DataSHIELD in a serverless environment.

isglobal-brge/dsOmicsClient documentation built on March 20, 2023, 3:52 p.m.