isglobal-brge/snpfier: Get inversion status in predefined regions
scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 21 inversions.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Genetics GenomicVariation SNP |
| Maintainer | Dolors Pelegri-Siso <dolors.pelegri@isglobal.org> |
| License | file LICENSE |
| Version | 1.13.3 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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