depmap_22q1_TPM: DepMap expression data
In j-andrews7/CRISPRball: Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering
depmap_22q1_TPM R Documentation
DepMap expression data
Description
The DepMap expression data for CDK2.
Usage
data(depmap_22q1_TPM)
Format
depmap_22q1_TPM
A dataframe with 1393 rows and 9 columns:
- depmap_id
Depmap cell line ID
- rna_expression
log2(TPM+1) expression
- entrez_id
Numeric entrez gene ID
- gene_name
Gene symbol
- dataset
Screen type, either CRISPR or RNAi
- cell_line_name
Cell line name
- primary_disease
Cell line disease origin
- lineage
Cell line lineage
- lineage_subtype
Cell line lineage subtype, usually a malignancy
- hover.string
String for hover text when plotting
Value
A dataframe containing DepMap 22Q1 expression data.
Source
https://depmap.org/portal/download/all/
https://bioconductor.org/packages/release/data/experiment/html/depmap.html
j-andrews7/CRISPRball documentation built on Nov. 30, 2023, 7:34 p.m.
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| depmap_22q1_TPM | R Documentation |
DepMap expression data
Description
The DepMap expression data for CDK2.
Usage
data(depmap_22q1_TPM)
Format
depmap_22q1_TPM
A dataframe with 1393 rows and 9 columns:
- depmap_id
Depmap cell line ID
- rna_expression
log2(TPM+1) expression
- entrez_id
Numeric entrez gene ID
- gene_name
Gene symbol
- dataset
Screen type, either CRISPR or RNAi
- cell_line_name
Cell line name
- primary_disease
Cell line disease origin
- lineage
Cell line lineage
- lineage_subtype
Cell line lineage subtype, usually a malignancy
- hover.string
String for hover text when plotting
Value
A dataframe containing DepMap 22Q1 expression data.
Source
https://depmap.org/portal/download/all/
https://bioconductor.org/packages/release/data/experiment/html/depmap.html
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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