Files in j-andrews7/CRISPRball
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering
.BBSoptions
.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/check-standard.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/CRISPRball.R
R/CRISPRball.References.R
R/UI_QC.R
R/UI_about.R
R/UI_comparison.R
R/UI_data_upload.R
R/UI_depmap.R
R/UI_gene.R
R/UI_sgrna.R
R/UI_styling.R
R/data.R
R/observers_UI.R
R/observers_comparisons.R
R/observers_data_upload.R
R/observers_gene.R
R/observers_qc.R
R/observers_sgrna.R
R/outputs_comparisons.R
R/outputs_depmap.R
R/outputs_dl_handlers.R
R/outputs_gene.R
R/outputs_qc.R
R/outputs_sgrna.R
R/plotting_depmap.R
R/plotting_gene_sgrna.R
R/plotting_qc.R
R/plotting_utils.R
R/utils_data_upload.R
R/utils_depmap.R
R/zzz.R
README.md
data-raw/depmap_22q1_TPM.R
data-raw/depmap_22q1_TPM.csv
data-raw/depmap_22q1_cn.R
data-raw/depmap_22q1_cn.csv
data-raw/depmap_22q1_crispr.R
data-raw/depmap_22q1_crispr.csv
data-raw/depmap_22q1_crispr_rnai.R
data-raw/depmap_22q1_crispr_rnai.csv
data-raw/depmap_22q1_rnai.R
data-raw/depmap_22q1_rnai.csv
data/depmap_22q1_TPM.rda
data/depmap_22q1_cn.rda
data/depmap_22q1_crispr.rda
data/depmap_22q1_crispr_rnai.rda
data/depmap_22q1_rnai.rda
inst/extdata/beta_leukemia.gene_summary.txt
inst/extdata/beta_leukemia.sgrna_summary.txt
inst/extdata/esc1.gene_summary.txt
inst/extdata/esc1.sgrna_summary.txt
inst/extdata/escneg.count_normalized.txt
inst/extdata/escneg.countsummary.txt
inst/extdata/leukemia.new_1000.csv
inst/extdata/plasmid.gene_summary.txt
inst/extdata/plasmid.sgrna_summary.txt
inst/logo/CRISPRball_Hex.png
inst/script/mageck_mle.sh
inst/script/mageck_rra.sh
longtests/testthat.R
longtests/testthat/test-build_depmap_db.R
man/CRISPRball.Rd
man/build_depmap_db.Rd
man/depmap_22q1_TPM.Rd
man/depmap_22q1_cn.Rd
man/depmap_22q1_crispr.Rd
man/depmap_22q1_crispr_rnai.Rd
man/depmap_22q1_rnai.Rd
man/gene_ingress.Rd
man/get_depmap_essentiality.Rd
man/get_depmap_plot_data.Rd
man/plot_bar.Rd
man/plot_correlation_heatmap.Rd
man/plot_depmap_cn.Rd
man/plot_depmap_dependency.Rd
man/plot_depmap_expression.Rd
man/plot_depmap_lineages.Rd
man/plot_hist.Rd
man/plot_lawn.Rd
man/plot_pca_biplot.Rd
man/plot_rank.Rd
man/plot_volcano.Rd
man/read_mle_gene_summary.Rd
tests/testthat.R
tests/testthat/setup-data.R
tests/testthat/test-plotting_depmap.R
tests/testthat/test-plotting_gene_sgrna.R
tests/testthat/test-plotting_qc.R
tests/testthat/test-utils_depmap.R
vignettes/CRISPRball.Rmd
vignettes/depmap_cb.png
vignettes/gene_cb.png
vignettes/rra_qc_cb.png
vignettes/upload_cb.png
