read_mle_gene_summary: Read and parse MAGeCK MLE output gene summary file

In j-andrews7/CRISPRball: Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Read and parse MAGeCK MLE output gene summary file

Description

This function reads the gene summary file output by mageck mle and parses it into a list of data.frames, one for each sample. The sample names are extracted from the column names of the input file and used as the names of the list elements.

Usage

read_mle_gene_summary(filepath)

Arguments

filepath

Path to the gene summary file output by mageck mle.

Value

A named list of data.frames containing MAGeCK MLE output, one for each sample contained in the file.

Author(s)

Jared Andrews

Examples

library(CRISPRball)
mle_gene_summary <- file.path(system.file("extdata", "beta_leukemia.gene_summary.txt",
    package = "CRISPRball"
))
gene_data <- read_mle_gene_summary(mle_gene_summary)

j-andrews7/CRISPRball documentation built on Nov. 30, 2023, 7:34 p.m.