depmap_22q1_cn: DepMap copy number data

In j-andrews7/CRISPRball: Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

DepMap copy number data

Description

The DepMap copy number data for CDK2.

Usage

data(depmap_22q1_cn)

Format

depmap_22q1_TPM

A dataframe with 1754 rows and 9 columns:

depmap_id

Depmap cell line ID

log_copy_number

log2 copy number

entrez_id

Numeric entrez gene ID

gene_name

Gene symbol

dataset

Screen type, either CRISPR or RNAi

cell_line_name

Cell line name

primary_disease

Cell line disease origin

lineage

Cell line lineage

lineage_subtype

Cell line lineage subtype, usually a malignancy

hover.string

String for hover text when plotting

Value

A dataframe containing DepMap 22Q1 copy number data.

Source

https://depmap.org/portal/download/all/

https://bioconductor.org/packages/release/data/experiment/html/depmap.html

j-andrews7/CRISPRball documentation built on Nov. 30, 2023, 7:34 p.m.