plot_depmap_lineages: Plot selected information across lineages from DepMap.

In j-andrews7/CRISPRball: Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Plot selected information across lineages from DepMap.

Description

Plot selected information across lineages from DepMap.

Usage

plot_depmap_lineages(
  df,
  plot.val,
  group.by,
  lineage = NULL,
  depline = TRUE,
  label.size = 12,
  pt.size = 5,
  pt.color = "#56B4E9",
  boxplot.fill = "#E2E2E2",
  boxplot.line.color = "#000000"
)

Arguments

df	data.frame containing information for a single gene as returned by get_depmap_plot_data.
plot.val	Character scalar of column name to plot values from.
group.by	Character scalar of column name to group by.
lineage	Character scalar of lineage for which to plot sub-lineage data.
depline	Boolean indicating whether to show the dependency threshold line.
label.size	Numeric scaler for axis label size.
pt.size	Numeric scalar for point size.
pt.color	Character scalar for point color.
boxplot.fill	Character scalar for boxplot fill color.
boxplot.line.color	Character scalar for boxplot line color.

Value

plotly object

Author(s)

Jared Andrews

See Also

get_depmap_plot_data

Examples

library(CRISPRball)
data("depmap_22q1_rnai")
plot_depmap_lineages(df = depmap_22q1_rnai, plot.val = "dependency", group.by = "lineage")

j-andrews7/CRISPRball documentation built on Nov. 8, 2024, 2:43 a.m.