Man pages for j-andrews7/EZscRNA
Simple Convenience Functions for High-Level scRNA-Seq Analysis
| AddClonotype | Add 10X clonotype data to seurat object |
| AssignCellType | Infers and assigns nearest cell type for each cell using... |
| BatchCCEDA | Exploratory data analysis plots |
| ClusterDEG | Normalize, scale, and regress out wanted variation |
| NormScoreCC | Normalize counts and score cell cycle for each cell |
| PerformCellInference | Performs SingleR inference |
| RunEnrichr | Perform enrichment analyses for a gene list |
| RunQC | Creates basic QC plots |
| ScoreAnnotatedMarkers | Score annotated marker lists |
| SimpleIntegration | Integrate Seurat objects simply and easily |
| VizAnnotatedMarkers | Visualize an annotated marker list |
| VizDotPlot | Creates DotPlot for gene set |
| VizEnrichments | Visualize GO/pathway enrichments |
| VizHeatmap | Creates Heatmap for gene set |
| VizMetaData | Visualize a Seurat object by metadata variables |
| VizRidgePlot | Creates RidgePlots for gene set |
| VizScoredSets | Visualize scored gene modules |
| VizVDJDist | Visualize clonotype distributions |
| VizVlnPlot | Creates VlnPlots for gene set |
