RunQC: Creates basic QC plots
In j-andrews7/EZscRNA: Simple Convenience Functions for High-Level scRNA-Seq Analysis
Description
Usage
Arguments
Value
Author(s)
Examples
Description
RunQC saves 3 QC plots showing gene counts, read counts, and percent
mitochondrial reads per cell to help determine filters. It returns a
Seurat object with percent mitochondrial reads added to the
meta.data.
Usage
1
Arguments
scrna
Seurat object.
outdir
Path to output directory for QC plots. Will not plot if not
set.
Value
Seurat object with percent mitochondrial reads added to
the meta.data for each cell.
Author(s)
Jared Andrews
Examples
1
2
j-andrews7/EZscRNA documentation built on Feb. 24, 2020, 10:37 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
RunQC saves 3 QC plots showing gene counts, read counts, and percent
mitochondrial reads per cell to help determine filters. It returns a
Seurat object with percent mitochondrial reads added to the
meta.data.
Usage
1 |
Arguments
scrna |
Seurat object. |
outdir |
Path to output directory for QC plots. Will not plot if not set. |
Value
Seurat object with percent mitochondrial reads added to
the meta.data for each cell.
Author(s)
Jared Andrews
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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