AddClonotype: Add 10X clonotype data to seurat object
In j-andrews7/EZscRNA: Simple Convenience Functions for High-Level scRNA-Seq Analysis
Description
Usage
Arguments
Details
Value
Description
AddClonotype adds clonotype info from matched 10X VDJ sequencing to
the metadata of a given Seurat object.
Usage
1
AddClonotype(vdj.dir, scrna)
Arguments
vdj.dir
String containing path to TCR (VDJ) directory.
scrna
Seurat object.
Details
This function is admittedly rough and will be rewritten in the future. It
does not include specific VDJ genes for each cell, rather just using the
final amino acid sequence for inter-sample comparison.
Value
Seurat object with clonotype data (clonotype_id
and cdr3s_aa) added to the metadata for each cell.
j-andrews7/EZscRNA documentation built on Feb. 24, 2020, 10:37 a.m.
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Description Usage Arguments Details Value
Description
AddClonotype adds clonotype info from matched 10X VDJ sequencing to
the metadata of a given Seurat object.
Usage
1 | AddClonotype(vdj.dir, scrna)
|
Arguments
vdj.dir |
String containing path to TCR (VDJ) directory. |
scrna |
Seurat object. |
Details
This function is admittedly rough and will be rewritten in the future. It does not include specific VDJ genes for each cell, rather just using the final amino acid sequence for inter-sample comparison.
Value
Seurat object with clonotype data (clonotype_id and cdr3s_aa) added to the metadata for each cell.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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