ScoreAnnotatedMarkers: Score annotated marker lists
In j-andrews7/EZscRNA: Simple Convenience Functions for High-Level scRNA-Seq Analysis
Description
Usage
Arguments
Value
See Also
Description
ScoreAnnotatedMarkers scores Seurat objects for lists of
marker genes associated with a given annotation. Scores are stored in
meta.data columns named after each set.
Usage
1
ScoreAnnotatedMarkers(scrna, marker.df)
Arguments
scrna
Seurat object.
marker.df
Dataframe with two columns named "Set" and "Marker".
The "Set" column should contain a cell or process-type (e.g. Tcell, Bcell,
Exhaustion markers, etc.) while the "Marker" column contains the
comma-delimited gene symbols associated with it.
Value
Seurat object with scores for each "Set" added to
meta.data.
See Also
AddModuleScore for scoring info and
VizAnnotatedMarkers for convenient visualization options.
j-andrews7/EZscRNA documentation built on Feb. 24, 2020, 10:37 a.m.
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Description Usage Arguments Value See Also
Description
ScoreAnnotatedMarkers scores Seurat objects for lists of
marker genes associated with a given annotation. Scores are stored in
meta.data columns named after each set.
Usage
1 | ScoreAnnotatedMarkers(scrna, marker.df)
|
Arguments
scrna |
Seurat object. |
marker.df |
Dataframe with two columns named "Set" and "Marker". The "Set" column should contain a cell or process-type (e.g. Tcell, Bcell, Exhaustion markers, etc.) while the "Marker" column contains the comma-delimited gene symbols associated with it. |
Value
Seurat object with scores for each "Set" added to
meta.data.
See Also
AddModuleScore for scoring info and
VizAnnotatedMarkers for convenient visualization options.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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