jaehyunjoo/poplin
LC/MS Metabolomics Data Processing Utilities

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Search the jaehyunjoo/poplin package
Vignettes
Functions
244
Source code
37
Man pages
31
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jaehyunjoo/poplin: LC/MS Metabolomics Data Processing Utilities
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API

API for jaehyunjoo/poplin
LC/MS Metabolomics Data Processing Utilities

Global functions
.auto_scale Source code
.check_dimnames Source code
.check_name_duplicates Source code
.check_reddim_attributes Source code
.check_samplenames Source code
.get_poplinData_data_character Source code
.get_poplinData_data_integer Source code
.get_poplinData_data_missing Source code
.get_poplinData_names Source code
.get_poplinReduced_data_character Source code
.get_poplinReduced_data_integer Source code
.get_poplinReduced_data_missing Source code
.get_poplinReduced_names Source code
.get_subset_index Source code
.idx_to_keep_by_missing Source code
.impute_halfmin Source code
.impute_knn Source code
.impute_mean Source code
.impute_median Source code
.impute_pca Source code
.impute_randomforest Source code
.impute_univariate Source code
.level_scale Source code
.mat_stats Source code
.normalize_auto Source code
.normalize_columns Source code
.normalize_cyclicloess Source code
.normalize_euclidean Source code
.normalize_fun_dispatch Source code
.normalize_level Source code
.normalize_mad Source code
.normalize_mean Source code
.normalize_median Source code
.normalize_pareto Source code
.normalize_pqn Source code
.normalize_range Source code
.normalize_scale Source code
.normalize_sum Source code
.normalize_vast Source code
.normalize_vsn Source code
.pareto_scale Source code
.pca_nipals Source code
.pca_svd Source code
.poplin_extract_and_assign Source code
.poplin_impute Source code
.poplin_normalize Source code
.poplin_reduce Source code
.poplin_show Source code
.poplin_to_assays Source code
.poplin_to_se_coldata Source code
.poplin_to_se_rowdata Source code
.range_scale Source code
.reduce_pca Source code
.reduce_plsda Source code
.reduce_tsne Source code
.reduced_extract_and_assign Source code
.replace_columns Source code
.replace_empty_names Source code
.se_to_poplin Source code
.set_poplinData_data_character Source code
.set_poplinData_data_integer Source code
.set_poplinData_data_missing Source code
.set_poplinData_datalist Source code
.set_poplinData_names Source code
.set_poplinReduced_data_character Source code
.set_poplinReduced_data_integer Source code
.set_poplinReduced_data_missing Source code
.set_poplinReduced_datalist Source code
.set_poplinReduced_names Source code
.subset_columns Source code
.vast_scale Source code
.verify_and_extract_input Source code
[,poplin,ANY,ANY,ANY-method Man page
[.poplin.matrix Man page
[<-,poplin,ANY,ANY,poplin-method Man page
`[.poplin.matrix` Source code
cbind,poplin-method Man page
cbind.poplin.matrix Man page Source code
coerce,SummarizedExperiment,poplin-method Man page
faahko_poplin Man page
impute_knn Man page
impute_knn,matrix-method Man page
impute_knn,poplin-method Man page
impute_pca Man page
impute_pca,matrix-method Man page
impute_pca,poplin-method Man page
impute_randomforest Man page
impute_randomforest,matrix-method Man page
impute_randomforest,poplin-method Man page
impute_univariate Man page
impute_univariate,matrix-method Man page
impute_univariate,poplin-method Man page
normalize_cyclicloess Man page
normalize_cyclicloess,matrix-method Man page
normalize_cyclicloess,poplin-method Man page
normalize_mad Man page
normalize_mad,matrix-method Man page
normalize_mad,poplin-method Man page
normalize_mean Man page
normalize_mean,matrix-method Man page
normalize_mean,poplin-method Man page
normalize_median Man page
normalize_median,matrix-method Man page
normalize_median,poplin-method Man page
normalize_pqn Man page
normalize_pqn,matrix-method Man page
normalize_pqn,poplin-method Man page
normalize_scale Man page
normalize_scale,matrix-method Man page
normalize_scale,poplin-method Man page
normalize_sum Man page
normalize_sum,matrix-method Man page
normalize_sum,poplin-method Man page
normalize_vsn Man page
normalize_vsn,matrix-method Man page
normalize_vsn,poplin-method Man page
poplin Man page Source code
poplin-class Man page
poplin-combine/subset Man page
poplin-internals Man page
poplin.matrix Man page Source code
poplin.matrix-class Man page
poplinData Man page
poplinData,poplin-method Man page
poplinData<- Man page
poplinData<-,poplin-method Man page
poplinReduced Man page
poplinReduced,poplin-method Man page
poplinReduced<- Man page
poplinReduced<-,poplin-method Man page
poplin_biplot Man page Source code
poplin_biplot.default Man page Source code
poplin_biplot.poplin Man page Source code
poplin_biplot.poplin.pca Man page Source code
poplin_biplot.poplin.plsda Man page Source code
poplin_boxplot Man page Source code
poplin_boxplot.default Man page Source code
poplin_boxplot.poplin Man page Source code
poplin_corplot Man page Source code
poplin_corplot.default Man page Source code
poplin_corplot.poplin Man page Source code
poplin_data Man page
poplin_data,poplin,character-method Man page
poplin_data,poplin,missing-method Man page
poplin_data,poplin,numeric-method Man page
poplin_data<- Man page
poplin_data<-,poplin,character-method Man page
poplin_data<-,poplin,missing-method Man page
poplin_data<-,poplin,numeric-method Man page
poplin_data_list Man page
poplin_data_list,poplin-method Man page
poplin_data_list<- Man page
poplin_data_list<-,poplin-method Man page
poplin_data_names Man page
poplin_data_names,poplin-method Man page
poplin_data_names<- Man page
poplin_data_names<-,poplin,character-method Man page
poplin_impute Man page
poplin_impute,matrix-method Man page
poplin_impute,poplin-method Man page
poplin_naplot Man page Source code
poplin_naplot.default Man page Source code
poplin_naplot.poplin Man page Source code
poplin_normalize Man page
poplin_normalize,matrix-method Man page
poplin_normalize,poplin-method Man page
poplin_raw Man page
poplin_raw,poplin,character-method Man page
poplin_raw,poplin,missing-method Man page
poplin_raw,poplin,numeric-method Man page
poplin_raw<- Man page
poplin_raw<-,poplin,character-method Man page
poplin_raw<-,poplin,missing-method Man page
poplin_raw<-,poplin,numeric-method Man page
poplin_raw_list Man page
poplin_raw_list,poplin-method Man page
poplin_raw_list<- Man page
poplin_raw_list<-,poplin-method Man page
poplin_raw_names Man page
poplin_raw_names,poplin-method Man page
poplin_raw_names<- Man page
poplin_raw_names<-,poplin,character-method Man page
poplin_reduce Man page
poplin_reduce,matrix-method Man page
poplin_reduce,poplin-method Man page
poplin_reduced Man page
poplin_reduced,poplin,character-method Man page
poplin_reduced,poplin,missing-method Man page
poplin_reduced,poplin,numeric-method Man page
poplin_reduced<- Man page
poplin_reduced<-,poplin,character-method Man page
poplin_reduced<-,poplin,missing-method Man page
poplin_reduced<-,poplin,numeric-method Man page
poplin_reduced_list Man page
poplin_reduced_list,poplin-method Man page
poplin_reduced_list<- Man page
poplin_reduced_list<-,poplin-method Man page
poplin_reduced_names Man page
poplin_reduced_names,poplin-method Man page
poplin_reduced_names<- Man page
poplin_reduced_names<-,poplin,character-method Man page
poplin_scoreplot Man page Source code
poplin_scoreplot.default Man page Source code
poplin_scoreplot.poplin Man page Source code
poplin_scoreplot.poplin.pca Man page Source code
poplin_scoreplot.poplin.plsda Man page Source code
print.poplin.matrix Source code
rbind,poplin-method Man page
rbind.poplin.matrix Man page Source code
reduce_pca Man page
reduce_pca,matrix-method Man page
reduce_pca,poplin-method Man page
reduce_plsda Man page
reduce_plsda,matrix-method Man page
reduce_plsda,poplin-method Man page
reduce_tsne Man page
reduce_tsne,matrix-method Man page
reduce_tsne,poplin-method Man page
summary.poplin.pca Source code
summary.poplin.plsda Source code
summary.poplin.tsne Source code
jaehyunjoo/poplin documentation built on Jan. 8, 2022, 1:13 a.m.

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