API for jameshay218/virosolver
Infer epidemic dynamics using viral load data
| Global functions | |
|---|---|
| .onLoad | Source code |
| SEEIRRModel | Man page Source code |
| calculate_gr_ct_relationships | Man page Source code |
| calculate_gr_ct_relationships_R0s | Man page Source code |
| compare_tsi_dist_at_gr | Man page Source code |
| create_post_func_seeirr | Man page Source code |
| create_post_func_seeirr_combined | Man page Source code |
| create_posterior_func | Man page Source code |
| create_posterior_func_detectable | Man page Source code |
| detectable_SEEIRRModel | Man page Source code |
| detectable_SEIRModel | Man page Source code |
| dgumbel_jh | Source code |
| example_ct_data | Man page |
| example_epi_data | Man page |
| example_gp_partab | Man page |
| example_seir_incidence | Man page |
| example_seir_partab | Man page |
| exponential_growth_model | Man page Source code |
| gaussian_process_model | Man page Source code |
| generate_viable_start_pars | Man page Source code |
| likelihood_R | Man page Source code |
| likelihood_cpp | Source code |
| likelihood_cpp_wrapper | Man page Source code |
| likelihood_detectable | Man page Source code |
| likelihood_kinetics_model | Source code |
| likelihood_pos_R | Man page Source code |
| likelihood_pos_only_cpp | Source code |
| p_a | Man page Source code |
| pgumbel_jh | Source code |
| pgumbel_scale | Source code |
| plot_distribution_fits | Man page Source code |
| plot_posterior_density | Man page Source code |
| plot_prob_infection | Man page Source code |
| pred_age_since_inf_symptomatic | Source code |
| pred_dist_cpp | Source code |
| pred_dist_cpp_symptoms | Source code |
| pred_dist_wrapper | Man page Source code |
| predicted_distribution_fits | Man page Source code |
| prob_detectable_curve | Man page Source code |
| prop_detectable | Man page Source code |
| prop_detectable_cpp | Source code |
| prop_detectable_single | Man page Source code |
| reverse_gp_model | Man page Source code |
| simulate_detectable_wrapper | Man page Source code |
| simulate_infection_times | Man page Source code |
| simulate_observations_wrapper | Man page Source code |
| simulate_reporting | Man page Source code |
| simulate_seir_process | Man page Source code |
| simulate_seir_wrapper | Man page Source code |
| simulate_viral_loads | Man page Source code |
| simulate_viral_loads_example | Man page Source code |
| simulate_viral_loads_example_symptoms | Man page Source code |
| simulate_viral_loads_wrapper | Man page Source code |
| solveSEEIRRModel_rlsoda | Man page Source code |
| solveSEEIRRModel_rlsoda_wrapper | Man page Source code |
| solveSEIRModel_lsoda | Man page Source code |
| solveSEIRModel_lsoda_wrapper | Man page Source code |
| solveSEIRModel_rlsoda | Man page Source code |
| solveSEIRModel_rlsoda_wrapper | Man page Source code |
| solveSEIRswitch_rlsoda | Man page Source code |
| solveSEIRswitch_rlsoda_wrapper | Man page Source code |
| vignette_data1 | Man page |
| vignette_data2 | Man page |
| viral_load_func | Man page Source code |
| viral_load_func_single_cpp | Source code |
