solveSEIRswitch_rlsoda_wrapper: Wrapper function for the solveSEIRswitch_rlsoda code, which...

In jameshay218/virosolver: Infer epidemic dynamics using viral load data

Wrapper function for the solveSEIRswitch_rlsoda code, which is written in C.

Description

This function returns a vector of incidence values for given times according to SEIR model parameters. This function takes into account models in which R0 changes over time. Note that rlsoda solves the model faster than lsoda from the deSolve package but is not available on CRAN and must be downloaded manually from GitHub.

Usage

solveSEIRswitch_rlsoda_wrapper(pars, times)

Arguments

pars	Vector of labeled SEIR model parameters.
times	Time points for incidence calculation.

Value

Returns incidence values for given points in time.

Author(s)

James Hay, [e-mail]

See Also

Other incidence functions: SEEIRRModel(), detectable_SEEIRRModel(), detectable_SEIRModel(), exponential_growth_model(), gaussian_process_model(), reverse_gp_model(), solveSEEIRRModel_rlsoda_wrapper(), solveSEEIRRModel_rlsoda(), solveSEIRModel_lsoda_wrapper(), solveSEIRModel_lsoda(), solveSEIRModel_rlsoda_wrapper(), solveSEIRModel_rlsoda(), solveSEIRswitch_rlsoda()

Examples

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jameshay218/virosolver documentation built on April 17, 2025, 2:57 p.m.