prop_detectable: Proportion still detectable (range of times)

In jameshay218/virosolver: Infer epidemic dynamics using viral load data

Proportion still detectable (range of times)

Description

Gives the proportion of infections still detectable over a range of times since infection (referred to as 'ages')

Usage

prop_detectable(ages, pars, viral_loads)

Arguments

ages	Vector of times since infection.
pars	Model parameters.
viral_loads	Observed viral loads.

Value

Returns a vector of probabilities.

Author(s)

James Hay, [e-mail]

See Also

Other likelihood functions: likelihood_R(), likelihood_cpp_wrapper(), likelihood_detectable(), likelihood_pos_R(), p_a(), prob_detectable_curve(), prop_detectable_single()

Examples

data(example_gp_partab)
pars <- example_gp_partab$values
names(pars) <- example_gp_partab$names
test_ages <- seq(1,50,by=1)
cts <- viral_load_func(pars, test_ages)
prop_detect <- prop_detectable(test_ages,pars, cts)

jameshay218/virosolver documentation built on April 17, 2025, 2:57 p.m.