simulate_viral_loads: Simulate viral loads

In jameshay218/virosolver: Infer epidemic dynamics using viral load data

Simulate viral loads

Description

Takes infection times, the times over which to solve the model, and the viral kinetics parameters and returns a tibble containing true and observed viral loads.

Usage

simulate_viral_loads(
  infection_times,
  solve_times,
  kinetics_pars,
  vl_func_use = viral_load_func,
  convert_vl = FALSE,
  add_noise = NULL
)

Arguments

infection_times	Vector containing infection times.
solve_times	Vector of times at which individuals can be reported.
kinetics_pars	Vector of named parameters for the viral kinetics model.
vl_func_use	Determines which viral load function to use. The default is viral_load_func.
convert_vl	Convert to viral load value. FALSE by default.
add_noise	Add noise to Ct values? NULL by default.

Value

Returns a tibble containing true and observed viral loads.

Author(s)

James Hay, [e-mail]

See Also

Other simulation functions: simulate_infection_times(), simulate_observations_wrapper(), simulate_reporting(), simulate_seir_process(), simulate_seir_wrapper(), simulate_viral_loads_wrapper()

jameshay218/virosolver documentation built on April 17, 2025, 2:57 p.m.