get_allinf: get_allinf

Description Usage Arguments Value Author(s)

View source: R/get_allinf.R

Description

This function allows users to map metabolite/chemical IDs to additional fields such as KEGG BRITE IDs, KEGG Pathway IDs, SMPDB IDs, HMDB Status, HMDB source, etc. depending upon the database.

Usage

1
get_allinf(dataA,dbname)

Arguments

dataA

data matrix with the first column corresponding to KEGG or HMDB IDs

dbname

Database name. e.g.: "KEGG", "HMDB", "T3DB"

Value

Returns an object with chemical/metabolite IDs merged with external IDs, BRITE categories, pathway IDs, etc.

Author(s)

Karan Uppal


jaspershen/MSannotator documentation built on May 18, 2019, 5:55 p.m.