Description Usage Arguments Value Author(s)
View source: R/get_mz_by_KEGGspecies.R
This function generates list of expected m/z based on adducts for all compounds associated with a species.
1 2 | get_mz_by_KEGGspecies(kegg_species_code = "hsa",
queryadductlist = c("M+H"),syssleep=0.01)
|
kegg_species_code |
KEGG organism code. e.g.: "hsa" for homo sapiens. |
queryadductlist |
List of adducts to be used for searching. eg: c("M+H","M+Na","M+K"), c("positive") for all positive adducts, c("negative") for all negative adducts, c("all") for all adducts |
syssleep |
Wait time between queries to prevent overloading the KEGG REST interface. e.g.: 0.1 |
Generates a text file with a list of expected m/z for all compounds associated with a given species in KEGG.
Karan Uppal <kuppal2@emory.edu>
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