get_mz_by_KEGGpathwayIDs: get_mz_by_KEGGpathwayIDs

In jaspershen/MSannotator: xMSannotator: R package for network based annotation of metabolomics data.

Description

Generate list of expected m/z based on adducts for compounds in a given KEGG pathway.

Usage

get_mz_by_KEGGpathwayIDs(kegg_pathway_ids, 
queryadductlist = c("M+H"), syssleep = 0.01)

Arguments

kegg_pathway_ids	Vector of KEGG pathway IDs. e.g: c("map00270","map00966")
queryadductlist	List of adducts to be used for searching. eg: c("M+H","M+Na","M+K"), c("all") for all adducts
syssleep	Wait time between queries to prevent overloading the KEGG REST interface. e.g.: 0.1

Value

Returns an R object with expected m/z for compounds in the input list of KEGG pathways.

Author(s)

Karan Uppal <[e-mail]>

jaspershen/MSannotator documentation built on May 18, 2019, 5:55 p.m.