get_mz_by_KEGGpathwayIDs: get_mz_by_KEGGpathwayIDs

Description Usage Arguments Value Author(s)

View source: R/get_mz_by_KEGGpathwayIDs.R

Description

Generate list of expected m/z based on adducts for compounds in a given KEGG pathway.

Usage

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get_mz_by_KEGGpathwayIDs(kegg_pathway_ids, 
queryadductlist = c("M+H"), syssleep = 0.01)

Arguments

kegg_pathway_ids

Vector of KEGG pathway IDs. e.g: c("map00270","map00966")

queryadductlist

List of adducts to be used for searching. eg: c("M+H","M+Na","M+K"),

c("all") for all adducts

syssleep

Wait time between queries to prevent overloading the KEGG REST interface. e.g.: 0.1

Value

Returns an R object with expected m/z for compounds in the input list of KEGG pathways.

Author(s)

Karan Uppal <[email protected]>


jaspershen/MSannotator documentation built on May 17, 2017, 11:49 a.m.