get_kegg_map: get_kegg_map

In jaspershen/MSannotator: xMSannotator: R package for network based annotation of metabolomics data.

Description

This function allows users to color individiul objects in KEGG pathway maps and generate the output as an PNG image.

Usage

get_kegg_map(keggids, pathwayid, bgcolor, fgcolor)

Arguments

keggids	KEGG IDs to be colored. e.g.: c("C05345","C05378")
pathwayid	KEGG pathway ID: e.g.: "map01230"
bgcolor	Vector of the size of the keggids argument to indicate background color for each object. e.g.: c("red", "green")
fgcolor	Vector of the size of the keggids argument to indicate border and text color for each object. e.g.: c("black", "blue")

Value

PNG image for the KEGG pathway with colored objects

Author(s)

Karan Uppal

jaspershen/MSannotator documentation built on May 18, 2019, 5:55 p.m.