metIdentifyClass-class: An S4 class to represent annotation result.
In jaspershen/metID: Metabolite identification based on MS1 and MS2 spectra
metIdentifyClass-class R Documentation
An S4 class to represent annotation result.
Description
An S4 class to represent annotation result.
Slots
ms1.dataMS1 peak table. data.frame.
ms1.infoMS1 information of MS2 data. data.frame.
ms2.infoMS2 information of MS2 data. list.
identification.resultIdentification result. list.
match.resultMS1 peak table and MS2 data match result. data.frame.
adduct.tableAdduct table used for annotation. data.frame.
ms1.ms2.match.mz.tolParameter for annotation.
ms1.ms2.match.rt.tolParameter for annotation.
ms1.match.ppmParameter for annotation.
ms2.match.ppmParameter for annotation.
ms2.match.tolParameter for annotation.
rt.match.tolParameter for annotation.
polarityParameter for annotation.
ceParameter for annotation.
columnParameter for annotation.
ms1.match.weightParameter for annotation.
rt.match.weightParameter for annotation.
ms2.match.weightParameter for annotation.
pathParameter for annotation.
total.score.tolParameter for annotation.
candidate.numParameter for annotation.
databaseParameter for annotation.
threadsParameter for annotation.
versionParameter for annotation.
jaspershen/metID documentation built on July 31, 2022, 11:31 p.m.
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| metIdentifyClass-class | R Documentation |
An S4 class to represent annotation result.
Description
An S4 class to represent annotation result.
Slots
ms1.dataMS1 peak table. data.frame.
ms1.infoMS1 information of MS2 data. data.frame.
ms2.infoMS2 information of MS2 data. list.
identification.resultIdentification result. list.
match.resultMS1 peak table and MS2 data match result. data.frame.
adduct.tableAdduct table used for annotation. data.frame.
ms1.ms2.match.mz.tolParameter for annotation.
ms1.ms2.match.rt.tolParameter for annotation.
ms1.match.ppmParameter for annotation.
ms2.match.ppmParameter for annotation.
ms2.match.tolParameter for annotation.
rt.match.tolParameter for annotation.
polarityParameter for annotation.
ceParameter for annotation.
columnParameter for annotation.
ms1.match.weightParameter for annotation.
rt.match.weightParameter for annotation.
ms2.match.weightParameter for annotation.
pathParameter for annotation.
total.score.tolParameter for annotation.
candidate.numParameter for annotation.
databaseParameter for annotation.
threadsParameter for annotation.
versionParameter for annotation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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