mzIdentifyParam: Generate the mzIdentify parameter list

In jaspershen/metID: Metabolite identification based on MS1 and MS2 spectra

Generate the mzIdentify parameter list

Description

Generate the mzIdentify parameter list. \lifecycledeprecated

Usage

mzIdentifyParam(
  ms1.match.ppm = 25,
  polarity = c("positive", "negative"),
  column = c("rp", "hilic"),
  candidate.num = 1,
  database,
  threads = 3
)

Arguments

ms1.match.ppm	Precursor match ppm tolerance.
polarity	The polarity of data, "positive"or "negative".
column	"hilic" (HILIC column) or "rp" (reverse phase).
candidate.num	The number of candidates.
database	MS1 database name.
threads	Number of threads

Value

A mzIdentifyClass object.

Author(s)

Xiaotao Shen [e-mail]

See Also

The example and demo data of this function can be found https://jaspershen.github.io/metID/articles/metID.html

jaspershen/metID documentation built on July 31, 2022, 11:31 p.m.