Files in javirudolph/iStructureMetaco
an R package for the analysis of the internal structure of metacommunities
.Rbuildignore
.gitignore
DESCRIPTION
InternalStructureMetacommunities_2021_manuscript.zip
InternalStructureMetacommunities_2021_manuscript/Figures.R
InternalStructureMetacommunities_2021_manuscript/Supplement_word.Rmd
InternalStructureMetacommunities_2021_manuscript/Supplement_word.docx
InternalStructureMetacommunities_2021_manuscript/figA1.png
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/README.md
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/convergence_fx.R
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/figures_data.R
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/fixedLandscapes/orig-no-seed-E.RDS
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/fixedLandscapes/orig-no-seed-MEMsel.RDS
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/fixedLandscapes/orig-no-seed-XY.RDS
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/full_process_fx.R
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/landscape_fx.R
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/main_sim_fx.R
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/metacom_sim_fx.R
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/output_processing_fx.R
InternalStructureMetacommunities_2021_manuscript/manuscript_functions/prep_pars_fx.R
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/FIG3C-params.RDS
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/FIG3C-vpsites.RDS
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/intData.RDS
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/sites_data.RDS
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/spp_data.RDS
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/tiff_files/Figure2.tiff
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/tiff_files/Figure3.tiff
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/tiff_files/Figure4_h.tiff
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/tiff_files/Figure5.tiff
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/tiff_files/Sup_F2_interactions.tiff
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/tiff_files/Sup_F3_ScenE.tiff
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/tiff_files/Sup_F4_ScenF.tiff
InternalStructureMetacommunities_2021_manuscript/manuscript_outputs/tiff_files/summary_table.csv
InternalStructureMetacommunities_2021_manuscript/run_all_manuscript.R
LICENSE.md
NAMESPACE
R/E.R
R/convergence_fx.R
R/full_process_fx.R
R/intData.R
R/main_sim_fx.R
R/metacom_sim_fx.R
R/orig-no-seed-MEMsel.R
R/orig-no-seed-XY.R
R/output_processing_fx.R
R/prep_pars_fx.R
R/sites_data.R
R/spp_data.R
README.Rmd
README.md
data-raw/paper2021.R
data/intData.rda
data/orig-no-seed-E.rda
data/orig-no-seed-MEMsel.rda
data/orig-no-seed-XY.rda
data/sites_data.rda
data/spp_data.rda
iStructureMetaco.Rproj
man/C_f.Rd
man/E_f.Rd
man/I_f.Rd
man/M_f.Rd
man/S_f_gaussian.Rd
man/S_f_quadratic.Rd
man/base_sites_plot.Rd
man/base_spp_plot.Rd
man/get_K.Rd
man/get_VPresults.Rd
man/get_VPresults_SITE.Rd
man/get_fig2_params.Rd
man/get_fig3_params.Rd
man/get_mcmc_lists.Rd
man/get_mcmc_obj.Rd
man/get_sites_data.Rd
man/get_species_data.Rd
man/interaction_plot.Rd
man/mainfx.Rd
man/metacom_as_HMSCdata.Rd
man/metacom_sim4HMSC.Rd
man/metacom_sim4HMSC_multParams.Rd
man/orig-no-seed-E.Rd
man/orig-no-seed-MEMsel.Rd
man/orig-no-seed-XY.Rd
man/prep_pars.Rd
man/sites_plot.Rd
man/species_plot.Rd
man/sum_interactions.Rd
vignettes/.gitignore
vignettes/iStructure2021manuscript.Rmd
