mainfx: Metacommunity Simulation

In javirudolph/iStructureMetaco: an R package for the analysis of the internal structure of metacommunities

Description

This function will use all the process functions to generate a metacommunity with the given parameters. It will only store the occurrence matrix at the end of the simulation

Usage

mainfx(XY, E, pars, Y0, nsteps, envResp = "quadratic")

Arguments

XY	coordinates for each of the patches
E	environmental covariates measured for each patch. Our simulation only included one so far
pars	output from the prep_pars function. It is a list of necessary parameters to run all the process functions
Y0	matrix of initial conditions, occurrence matrix
nsteps	time steps to simulate metacomminuty dynamics
envResp	choose between a "quadratic" or "gaussian" response to the environment. Default is "quadratic".

javirudolph/iStructureMetaco documentation built on Dec. 20, 2021, 9:09 p.m.