get_VPresults_SITE: Variation partinioning: sites

In javirudolph/iStructureMetaco: an R package for the analysis of the internal structure of metacommunities

Description

use of the VariPart function from HMSC, gets results at the level of species

Usage

get_VPresults_SITE(
  HMSCmodel,
  MEMsel,
  numClusters,
  makeRDS = FALSE,
  whereToSave = NULL,
  objName = NULL
)

Arguments

HMSCmodel	output from the metacom_as_HMSCdata() or an object from as.HMSCdata()
MEMsel	distance-based Moran' Eigenvector Map's eigenvector maps from a geographic distance matrix (xy matrix). This comes from adespatial::dbmem()
numClusters	number of clusters based on number of cores available to work with DoParallel
makeRDS	should the function make an RDS file from the output and save it? Default is FALSE
whereToSave	file path for the RDS file to be saved in
objName	should the RDS file be saved, what should it be called?

Details

I think this function can probably just be incorporated into the VariPart for species if we include and if statement for sites = TRUE

javirudolph/iStructureMetaco documentation built on Dec. 20, 2021, 9:09 p.m.