metacom_as_HMSCdata: Format metacommunity data to "HMSC" classes

In javirudolph/iStructureMetaco: an R package for the analysis of the internal structure of metacommunities

Description

This function will use the simulated metacommunity matrices and format the data into "HMSC" classes

Usage

metacom_as_HMSCdata(
  metacomData,
  numClusters,
  E,
  MEMsel,
  hmscPars = NULL,
  makeRDS = FALSE,
  whereToSave = NULL,
  objName = NULL
)

Arguments

metacomData	list of simulated metacommunity matrices. Output from metacom_sim4HMSC() or metacom_sim4HMSC_multiparam()
numClusters	number of clusters based on number of cores available to work with DoParallel
E	matrix of environmental variables associated to each site
MEMsel	distance-based Moran' Eigenvector Map's eigenvector maps from a geographic distance matrix (xy matrix). This comes from adespatial::dbmem()
hmscPars	list of parameters to be included for iterations, burn and thin components of the as.HMSCdata()
makeRDS	should the function make an RDS file from the output and save it? Default is FALSE
whereToSave	file path for the RDS file to be saved in
objName	should the RDS file be saved, what should it be called?

javirudolph/iStructureMetaco documentation built on Dec. 20, 2021, 9:09 p.m.