get_species_data: Organize and Format VP results at the species level

In javirudolph/iStructureMetaco: an R package for the analysis of the internal structure of metacommunities

Description

this function organizes species level data and gets it ready to plot. It takes the RDS file that is the output of the HMSC::variPart() function and reorganizes it into the env, codist and spa components.It also calculates the prevalence information for each species. organizes each fraction: into the env, spa and codist components

Usage

get_species_data(folderpath, scenario)

Arguments

folderpath	path to stored RDS files from the get_VP_results()
scenario	the specific name of the file to use. Should be able to access the both the metacomSim, the model and the VP results with this name.

javirudolph/iStructureMetaco documentation built on Dec. 20, 2021, 9:09 p.m.