Man pages for javirudolph/iStructureMetaco
an R package for the analysis of the internal structure of metacommunities
| base_sites_plot | Base Plots: Sites |
| base_spp_plot | Base Plots: Species |
| C_f | Metacommunity process: colonization |
| E_f | Metacommunity process: interactions and extinction |
| get_fig2_params | Get parameters for Figure 2 |
| get_fig3_params | Get parameters for Figure 3 |
| get_K | Metacommunity process: patch connectivity |
| get_mcmc_lists | Gelman Diagnostics for all chains |
| get_mcmc_obj | Get MCMC object |
| get_sites_data | Organize and format site level data |
| get_species_data | Organize and Format VP results at the species level |
| get_VPresults | Variation partinioning: species |
| get_VPresults_SITE | Variation partinioning: sites |
| I_f | Metacommunity process: immigration |
| interaction_plot | Create the species correlation matrices |
| mainfx | Metacommunity Simulation |
| metacom_as_HMSCdata | Format metacommunity data to "HMSC" classes |
| metacom_sim4HMSC | Metacommunity Simulation one set of parameters |
| metacom_sim4HMSC_multParams | Metacommunity Simulation for multiple sets of parameters |
| M_f | Metacomminbut process: extinction |
| orig-no-seed-E | Environmental variable for 1000 sites |
| orig-no-seed-MEMsel | Selected MEMs for 1000 sites |
| orig-no-seed-XY | Coordinates variable for 1000 sites |
| prep_pars | Prepare metacommunity parameters |
| S_f_gaussian | Metacommunity process: Environmental filtering with gaussian... |
| S_f_quadratic | Metacommunity process: Environmental filtering with quadratic... |
| sites_plot | Base Plots: Sites |
| species_plot | Base Plots: Species |
| sum_interactions | Metacommunity process: ecological interactions |
