View source: R/Lib_MapBetaDiversity.R
ordination_to_NN_list | R Documentation |
computes nearest neighbors of a SSD subset with samples used for the adjustment of the ordination, then gets the coordinates of each window in the ordination space
ordination_to_NN_list(
SSD_subset,
Sample_Sel,
Beta_Ordination_sel,
nb_partitions,
nbclusters,
pcelim,
p = NULL
)
SSD_subset |
numeric. subset of spectral species distribution file |
Sample_Sel |
numeric. Samples selected during ordination |
Beta_Ordination_sel |
numeric. ordination of dissimilarity matrix for a selection of spatial units |
nb_partitions |
numeric. Number of partitions (repetitions) to be computed then averaged. |
nbclusters |
numeric. Number of clusters defined in k-Means. |
pcelim |
numeric. Minimum contribution in percents required for a spectral species |
p |
function. |
OutPut list of mean and SD of alpha diversity metrics
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