Man pages for jbisanz/MicrobeR
Handy functions for microbiome analysis in R

Confidence.FilterFilter features such that they are present in at least X...
Fraction.Filter'Filter.OTUs.Fraction' Remove Features/OTUs/SVs representing...
helloHello, World!
Make.CLR'Make.CLR' Make a CLR-normalized Feature/OTU/SV table
Make.Percent'Make.Percent' Takes a table of Features/OTUs/SVs and...
Make.Proportion'Make.Proportion' Takes a table of Features/OTUs/SVs and...
Make.Tree.QIIME'Make.Tree.X' Generate a phylogenetic tree and optional plot
Merge.Replicates'Merge.Replicates' Sum counts together for replicates (ex....
Microbiome.Barplot'Microbiome.Barplot.R' Create a stacked barplot showing...
Microbiome.Heatmap'Microbiome.Heatmap.R' Plot heat map of microbiome data
Nice.Table'Nice.Table' Print interactive table for markdown documents...
PCoA'PCoA' Generate Distance/Dissimilarities and plot PCoA
PCoA3D'PCoA3D' Generate Distance/Dissimilarities and plot PCoA in...
Read.Filter'Read.Filter' Remove samples with less than a user specified...
Subsample.Table'Subsample.Table' Rarify/Subsample a Feature
Summarize.Taxa'Summarize.Taxa' Make taxa summary tables similar to QIIME...
TidyConvert.WhatAmIConvert between table formats as needed (used behind the...
jbisanz/MicrobeR documentation built on Feb. 22, 2018, 8:03 p.m.