Merge.Replicates: Merge.Replicates
In jbisanz/MicrobeR: Handy functions for microbiome analysis in R
Description
Usage
Arguments
Details
Value
Description
Collapses technical replicates by summing replicate counts.
Usage
1
2
3
x<-Merge.Replicates(svtable, metadata, "UniqueId")
newtable<-x$Features
newmeta<-x$Metadata
Arguments
FEATURES
Table of feature/OTU/SV counts where Samples are columns, and IDs are row names
METADATA
Table of metadata with sample name as row name
CATEGORY
A category used to dereplicate sequences , ex. "RepID"
VERBOSE
Should report on number of replicates be given (T/F)
Details
Sum counts together for replicates (ex. pcr/extraction/sequencing run)
Value
A named list of [[1]] new Feature/OTU/SV table and [[2]] collapsed metadata file
jbisanz/MicrobeR documentation built on June 5, 2019, 7:53 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value
Description
Collapses technical replicates by summing replicate counts.
Usage
1 2 3 | x<-Merge.Replicates(svtable, metadata, "UniqueId")
newtable<-x$Features
newmeta<-x$Metadata
|
Arguments
FEATURES |
Table of feature/OTU/SV counts where Samples are columns, and IDs are row names |
METADATA |
Table of metadata with sample name as row name |
CATEGORY |
A category used to dereplicate sequences , ex. "RepID" |
VERBOSE |
Should report on number of replicates be given (T/F) |
Details
Sum counts together for replicates (ex. pcr/extraction/sequencing run)
Value
A named list of [[1]] new Feature/OTU/SV table and [[2]] collapsed metadata file
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.