Fraction.Filter: Filter.OTUs.Fraction

Description Usage Arguments Value

Description

Remove Features/OTUs/SVs representing less than a certain specified fraction of the total dataset. Similar to filter_otus_from_otutable.py in QIIME.

Usage

1
Fraction.Filter(FEATURES, MINFRACTION, VERBOSE)

Arguments

FEATURES

Table of feature/OTU/SV counts where Samples are columns, and IDs are row names.

MINFRACTION

A fraction to use to filter.

VERBOSE

Should summary be printed? (T/F)

Value

Filtered Table


jbisanz/MicrobeR documentation built on June 5, 2019, 7:53 p.m.