Fraction.Filter: Filter.OTUs.Fraction
In jbisanz/MicrobeR: Handy functions for microbiome analysis in R
Description
Usage
Arguments
Value
Description
Remove Features/OTUs/SVs representing less than a certain specified fraction of the total dataset. Similar to filter_otus_from_otutable.py in QIIME.
Usage
1
Fraction.Filter(FEATURES, MINFRACTION, VERBOSE)
Arguments
FEATURES
Table of feature/OTU/SV counts where Samples are columns, and IDs are row names.
MINFRACTION
A fraction to use to filter.
VERBOSE
Should summary be printed? (T/F)
Value
Filtered Table
jbisanz/MicrobeR documentation built on June 5, 2019, 7:53 p.m.
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Description Usage Arguments Value
Description
Remove Features/OTUs/SVs representing less than a certain specified fraction of the total dataset. Similar to filter_otus_from_otutable.py in QIIME.
Usage
1 | Fraction.Filter(FEATURES, MINFRACTION, VERBOSE)
|
Arguments
FEATURES |
Table of feature/OTU/SV counts where Samples are columns, and IDs are row names. |
MINFRACTION |
A fraction to use to filter. |
VERBOSE |
Should summary be printed? (T/F) |
Value
Filtered Table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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