Description Usage Arguments Value
Remove samples with less than a user specified number of reads.
1 2 3 | filter<-Read.Filter(svtable, metadata, 5000)
newtable<-filter$Features
newmetadata<-filter$Metadata
|
FEATURES |
Table of feature/OTU/SV counts where Samples are columns, and IDs are row names. |
METADATA |
Metadata file where samples are row names. |
READCUTOFF |
Minimum number of reads to pass filter |
VERBOSE |
Should lists of which samples were removed or kept be printed to screen? (defaults to TRUE) |
PLOT |
Should a plot of read depth be made? (defaults to TRUE) |
A named list containing new feature table and metadata.
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