Confidence.Filter: Filter features such that they are present in at least X...

In jbisanz/MicrobeR: Handy functions for microbiome analysis in R

Description

Takes a table of features and filters for such that they are present in at least X samples with at least a total of Y reads

Usage

Confidence.Filter(FEATURES, MINSAMPS, MINREADS, VERBOSE)

Arguments

FEATURES	Table of feature/OTU/SV counts where Samples are columns, and feature IDs are row names
MINSAMPS	A minimum number of samples for the feature/OTU/SV to be observed in
MINREADS	A minimum number of reads for a feature/OTUs/SV to be kept across all samples
VERBOSE	Should summary be printed? (T/F)

Value

filtered feature table

jbisanz/MicrobeR documentation built on June 5, 2019, 7:53 p.m.