Man pages for jean997/fret
Association testing with spatially structured phenotypes
| choose_s0 | Select s0 using the method of Tusher, Tibshirani and Chu... |
| dnase1_test_windows | Run a variety of tests in pre-defined windows |
| find_segments | Use variance of smoothed permutation test statistics to... |
| fret_rates | Calculate lambda and fdr for each peak |
| fret_rates_prelim | Calculate per-base error rates for original and permutation... |
| fret_stats | Calculate FRET test statistics |
| get_stats | Helper function for calculating test statistics |
| hello | Hello, World! |
| ksmooth_0 | Box kernel smoother for integer positions |
| ksmooth_0_cpp | Kernel smoother for integer locations |
| ksmooth_0_stitch | Kernel smoother for integer locations |
| maxes_1seg | Get peak heights and permuted peak heights for one segment |
| stats_to_rates | Collect fret_stats temporary files |
