stats_to_rates: Collect fret_stats temporary files

In jean997/fret: Association testing with spatially structured phenotypes

Description

Combine temporary files from fret_stats into one file. Also determine interval boundaries.

Usage

stats_to_rates(file_list, seg_type = c("by_file", "by_chromosome", "find",
  "provided"), chromosome, segment_bounds, min_segment_length = NULL)

Arguments

file_list	List of files produced by fret_stats
seg_type	One of "by_file", "by_chromosome", "find", "provided". See description.
chromosome	Vector the same length as file_list giving the chromosome for each file. This is only required if seg_type is not equal to by_file.
segment_bounds	Optional data frame with columns start, stop and chrom.
min_segment_length	Used if seg_type="find". Minimum segment length. Defaults to 50*bandwidth if not provided.

jean997/fret documentation built on May 18, 2019, 11:43 p.m.