fret_rates: Calculate lambda and fdr for each peak
In jean997/fret: Association testing with spatially structured phenotypes
Description
Usage
Arguments
Value
Description
Find thresholds for a range of lambda values. Calculate FDR.
Usage
1
fret_rates(peaks, segment_info, max_fdr = 0.8)
Arguments
peaks
List of files with output from fret_rates_prelim
segment_info
Maximum fdr to keep data for
max_fdr
The permutation number to be treated as original data.
For main results, use perm=0. If you want to extract significant regions for
permuted data set perm to an integer in 1:n.perm
Value
An object that can be passed to fret_thresholds
jean997/fret documentation built on May 18, 2019, 11:43 p.m.
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Description Usage Arguments Value
Description
Find thresholds for a range of lambda values. Calculate FDR.
Usage
1 | fret_rates(peaks, segment_info, max_fdr = 0.8)
|
Arguments
peaks |
List of files with output from fret_rates_prelim |
segment_info |
Maximum fdr to keep data for |
max_fdr |
The permutation number to be treated as original data. For main results, use perm=0. If you want to extract significant regions for permuted data set perm to an integer in 1:n.perm |
Value
An object that can be passed to fret_thresholds
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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