dnase1_test_windows: Run a variety of tests in pre-defined windows
In jean997/fret: Association testing with spatially structured phenotypes
Description
Usage
Arguments
Value
Description
Calculate test statistics binning over regions
Usage
1
2
3
dnase1_test_windows(dat.file, pheno.file, window.file, chr, maxit = 50,
trait = "pheno", names = "name", save.collapsed = NULL,
waveqtl.min.pval = 1e-08, waveQTL_loc = "~/WaveQTL-master/bin/WaveQTL")
Arguments
dat.file
Data file
pheno.file
Phenotype file
maxit
Maximum iterations for Huber estimation
trait
Trait name in pheno.file
names
Names column in pheno.file
Value
A list
jean997/fret documentation built on May 18, 2019, 11:43 p.m.
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Description Usage Arguments Value
Description
Calculate test statistics binning over regions
Usage
1 2 3 | dnase1_test_windows(dat.file, pheno.file, window.file, chr, maxit = 50,
trait = "pheno", names = "name", save.collapsed = NULL,
waveqtl.min.pval = 1e-08, waveQTL_loc = "~/WaveQTL-master/bin/WaveQTL")
|
Arguments
dat.file |
Data file |
pheno.file |
Phenotype file |
maxit |
Maximum iterations for Huber estimation |
trait |
Trait name in pheno.file |
names |
Names column in pheno.file |
Value
A list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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