maxes_1seg: Get peak heights and permuted peak heights for one segment
In jean997/fret: Association testing with spatially structured phenotypes

Finds peak heights and permuatation peak heights for one segment

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maxes_1seg(dat.file, pheno.file, s0, zmin, seed, n.perm,
  save.perm.stats = FALSE, segment.bounds = NULL, out.file = NULL,
  max1.file = NULL, z0 = zmin * 0.3, bandwidth = 50, maxit = 50)

`dat.file`	Data file. Should have first column as position and a header giving sample names. One row per base pair.
`pheno.file`	Phenotype file. First column should correspond to the header of dat.file.
`s0`	Variance inflation constant.
`zmin`	Lower bound on significance thresholds.
`seed`	Set a seed for running permutations (Required)
`n.perm`	Number of permutations
`save.perm.stats`	Do you want to save all the permutation statistics?
`segment.bounds`	Length 2 vector giving start and stop base-pair for the segment. If NULL, all base-pairs in dat.file are used.
`out.file`	Output file (optional). If NULL will append "_mx.RData" to the leading portion of the dat.file name.
`max1.file`	File with data from running with n.perm=0
`z0`	Reference level for merging
`bandwidth`	Smoother bandwidth.
`maxit`	Maximum iterations for rlm.