Man pages for jefferis/rcatmaid
R access to the API for the CATMAID web image annotation tool
| as.catmaidmesh | Convert a mesh to CATMAID format |
| AV4b1 | A sample CATMAID neuron (from the adult lateral horn of class... |
| catmaid_add_volume | Add a 3D mesh surface to catmaid volume manager |
| catmaid_adjacency_matrix | Get connectivity adjacency matrix between set of neurons |
| catmaid_change_history | Return the edit history of a CATMAID skeleton |
| catmaid_connection_setenv | Import/Export catmaid connection details to system variables... |
| catmaid_entities_from_models | Convert between entity (neuron) and model (skeleton) ids |
| catmaid_fetch | Send http GET or POST request to a CATMAID server |
| catmaid_get_annotationlist | Get list of annotations (including user information) from... |
| catmaid_get_annotations_for_skeletons | Get or set annotations for neurons from CATMAID |
| catmaid_get_compact_skeleton | Return the raw data for a CATMAID neuronal skeleton |
| catmaid_get_connectors | Return skeleton ids for pre/postsynaptic partners of a set of... |
| catmaid_get_connectors_between | Return information about connectors joining sets of... |
| catmaid_get_connector_table | Return connector table for a given neuron |
| catmaid_get_contributor_stats | Get contributor statistics for neurons from CATMAID |
| catmaid_get_labels | Get/Set/Remove CATMAID treenode labels (aka tags) |
| catmaid_get_label_stats | Get statistics for all labels in a project from a CATMAID... |
| catmaid_get_neuronnames | Get names of neurons from CATMAID |
| catmaid_get_node_count | Get the number of nodes per skeleton |
| catmaid_get_review_status | Get review status of neurons from CATMAID |
| catmaid_get_time_invested | catmaid_get_time_invested |
| catmaid_get_treenodes_detail | Fetch position and other information for arbitrary treenode... |
| catmaid_get_treenode_table | Return tree node table for a given neuron |
| catmaid_get_user_list | Fetch or translate catmaid users for current/specified... |
| catmaid_get_volume | Fetch a mesh volume from CATMAID |
| catmaid_get_volumelist | Fetch a data frame containing details of all volumes on... |
| catmaid_islatest | Check if CATMAID skeleton ids are up to date |
| catmaid_latestid | Return the latest skeleton id accounting for edits |
| catmaid_lock_neurons | Lock or unlock a CATMAID neuron reconstruction |
| catmaid_login | Connect/authenticate to a CATMAID server, returning a... |
| catmaid_meta_annotations | Get, query, set and remove CATMAID meta-annotations for... |
| catmaid-package | catmaid: R access to the API for the CATMAID web image... |
| catmaid_parse_url | Parse a CATMAID URL to extract parameters including xyz... |
| catmaid_query_by_name | Get list of neurons/annotations querying by neuron/annotation... |
| catmaid_query_connected | Find neurons connected to a starting neuron |
| catmaid_rename_neuron | Rename (presently) a single neuron or other entity (e.g.... |
| catmaid_skids | Find skeleton ids (skids) for various inputs including... |
| catmaid_user_history | Fetch user contribution history |
| catmaid_version | Return the CATMAID version running on the server |
| connectors | Get data.frame of connector (synapse) information from a... |
| copy_tags_connectors | Copy the tag / connector info from a catmaid neuron to a new... |
| nsoma | Return the number of explicitly tagged somata in a (CATMAID)... |
| plot3d.catmaidneuron | Plot skeleton and connectors for neuron retrieved from... |
| read_catmaid_selection | Read a CATMAID selection file |
| read.neuron.catmaid | Read neuron(s) from CATMAID server into NeuroAnatomy Toolbox... |
| soma | Retrieve soma information for skeletons (specified via... |
| update | Update a local neuronlist with new CATMAID data |
| vfbcatmaid | A connection to the vfb catmaid server for a given dataset |
| write_catmaid_selection | Make a CATMAID selection file based on neuronlist or skids |
