as.catmaidmesh: Convert a mesh to CATMAID format

In jefferis/rcatmaid: R access to the API for the CATMAID web image annotation tool

Convert a mesh to CATMAID format

Description

Convert a mesh to CATMAID format

Usage

as.catmaidmesh(x, ...)

## S3 method for class 'hxsurf'
as.catmaidmesh(x, ...)

## S3 method for class 'mesh3d'
as.catmaidmesh(x, ...)

## Default S3 method:
as.catmaidmesh(x, title = NULL, comment = NULL, ...)

Arguments

x	A mesh object such as hxsurf or mesh3d object or a list with raw vertices (Nx3) and indices (Nx3).
...	Additional fields for the CATMAID mesh object
title	The title of the object as it will appear in the catmaid volume manager
comment	An informative comment - e.g. how the mesh was generated.

Details

The CATMAID mesh format is documented in the reference below and typically consists of a json encoded object with fields

• title

• mesh The mesh itself (a list of length 2)

• comments (optional)

In R we hold this list in a list object with class catmaidmesh. This can then be posted to the volume manager API.

References

https://github.com/catmaid/CATMAID/blob/master/sphinx-doc/source/volumes.rst

See Also

catmaid_add_volume

jefferis/rcatmaid documentation built on Aug. 16, 2022, 8:52 p.m.