catmaid_add_volume: Add a 3D mesh surface to catmaid volume manager

In jefferis/rcatmaid: R access to the API for the CATMAID web image annotation tool

Add a 3D mesh surface to catmaid volume manager

Description

Add a 3D mesh surface to catmaid volume manager

Usage

catmaid_add_volume(x, conn = NULL, pid = 1, ...)

Arguments

x	A mesh object such as hxsurf or a list with raw vertices and indices that will be passed to as.catmaidmesh
conn	A catmaid_connection objection returned by catmaid_login. If NULL (the default) a new connection object will be generated using the values of the catmaid.* package options as described in the help for catmaid_login.
pid	Project id (default 1)
...	Additional arguments passed to as.catmaidmesh such as title, comments etc.

Value

An invisible list with the post status response on success (the function will throw an error on failure)

See Also

as.catmaidmesh

Examples

## Not run: 
library(elmr)
FAFBNP.surf=xform_brain(JFRC2NP.surf, sample=JFRC2, ref=FAFB14)
for(r in FAFBNP.surf$RegionList){
  comment="Transformed from JFRC2 space onto FAFB14"
  name=paste("v14", sep=".", r)
  catmaid_add_volume(subset(FAFBNP.surf, r), title=name, comment=comment)
}

## End(Not run)

jefferis/rcatmaid documentation built on Aug. 16, 2022, 8:52 p.m.