plot3d.catmaidneuron: Plot skeleton and connectors for neuron retrieved from...

In jefferis/rcatmaid: R access to the API for the CATMAID web image annotation tool

Plot skeleton and connectors for neuron retrieved from CATMAID

Description

Plot skeleton and connectors for neuron retrieved from CATMAID

Usage

## S3 method for class 'catmaidneuron'
plot3d(x, WithConnectors = FALSE, WithNodes = FALSE, soma = FALSE, ...)

Arguments

x	A neuron to plot
WithConnectors	logical indicating whether or not to plot connectors (defaults to FALSE).
WithNodes	logical indicating whether to plot branch/end points (defaults to FALSE since they will obscure the synapses).
soma	Whether to plot a sphere at neuron's origin representing the soma. Either a logical value or a numeric indicating the radius (default FALSE). When soma=TRUE the radius is hard coded to 2.
...	additional arguments passed to plot3d.neuron (synapses). Default: TRUE.

See Also

plot3d.neuron

Examples

## Not run: 
nl=read.neurons.catmaid(c(4181593,15738886))
plot3d(nl)

# now with connectors (i.e. synapses)
plot3d(nl, WithConnectors=TRUE)

## End(Not run)

jefferis/rcatmaid documentation built on Aug. 16, 2022, 8:52 p.m.