Files in jefferys/fusionExpressionPlot
Plot Expression Profiles for Fused Genes
.Rbuildignore
.gitignore
DESCRIPTION
FusionExpressionPlot.Rproj
NAMESPACE
R/cohortFusions.R
R/cohortNormalizedExpression.R
R/dataRangeReductionUtils.R
R/fusionExpressionPlot.R
R/gafGeneModels.R
R/grUtils.R
R/stringUtils.R
R/systemRunUtils.R
csde1_test1.pdf
man/.Rapp.history
man/FusionExpressionPlot.Rd
man/addExonExpression.Rd
man/do.allPlots.Rd
man/do.plots.Rd
man/extractGeneModels.Rd
man/extractTranscriptModels.Rd
man/filterFusions.Rd
man/genomicToModelCoordinates.Rd
man/getCandidateFusions.Rd
man/getCohortExonExpressionData.Rd
man/getFusionExpressionPlotData.Rd
man/getMapSpliceCohortFusionData.Rd
man/grAddColumn.Rd
man/grFromCohortDf.Rd
man/grFromElementString.Rd
man/grFromLocationString.Rd
man/grNew.Rd
man/grToElementString.Rd
man/grToLocationString.Rd
man/grToRect.Rd
man/is.safeFileName.Rd
man/loadCohortDefinition.Rd
man/loadExonExpressionFile.Rd
man/loadGafModels.Rd
man/mapColors.Rd
man/mapLabels.Rd
man/normExpressionData.Rd
man/plotFusionExpressionOne.Rd
man/plotFusionExpressionPair.Rd
man/plotFusionExpressionPlotData.Rd
man/plotGeneExpression.Rd
man/pointToPoly.Rd
man/regexprNamedMatches.Rd
man/slurp.Rd
man/templateFill.Rd
tests/testthat.R
tests/testthat/data/CopyOfmock.gaf
tests/testthat/data/mock.exonExpression
tests/testthat/data/mock.gaf
tests/testthat/data/mock.gaf.extract.dup.geneModels
tests/testthat/data/mock.gaf.extract.dupNoUnk.geneModels
tests/testthat/data/mock.gaf.extract.geneModels
tests/testthat/data/mock.gaf.extract.transcriptModels
tests/testthat/data/tiny.bt.exon_quantification.txt
tests/testthat/test_0.r
tests/testthat/test_cohortFusions.r
tests/testthat/test_cohortNormalizedExpression.r
tests/testthat/test_dataRangeReductionUtils.r
tests/testthat/test_fusionExpressionPlot.r
tests/testthat/test_gafGeneModels.r
tests/testthat/test_grUtils.r
tests/testthat/test_stringUtils.r
tests/testthat/test_systemRunUtils.r
vignettes/Walkthrough.Rmd
vignettes/workingWIthGRangeObjects.Rmd
